Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs35127959 chr7:62041720 A/G 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs35170644 chr7:62064046 G/A 8.24E-7 366 23.83 20.05 11.27 KM Plot
CRC rs35175155 chr7:61988140 T/G 9.82E-7 360 22.53 20.3 11.27 KM Plot
CRC rs35239873 chr7:57771303 T/A 1.75E-6 372 23.37 20.47 11.92 KM Plot
CRC rs35242381 chr7:62134070 G/A 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs35248604 chr7:61994486 C/T 8.37E-7 365 22.67 20.3 11.27 KM Plot
CRC rs35249841 chr7:62121753 C/G 9.05E-7 369 24.33 20.08 11.27 KM Plot
CRC rs35298519 chr7:62098611 T/C 5.74E-6 369 24.33 20.23 14.37 KM Plot
CRC rs35315696 chr7:57805497 A/T 1.47E-6 371 23.07 20.7 11.92 KM Plot
CRC rs35506076 chr7:61069361 G/A 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs35613954 chr7:62063398 C/T 8.24E-7 366 23.83 20.05 11.27 KM Plot
CRC rs35639481 chr1:74842496 G/A 0 370 22.3 23.83 0.82 KM Plot
CRC rs35663747 chr7:62072060 A/T 6.97E-7 368 24.02 20.23 11.27 KM Plot
CRC rs35665867 chr1:109395436 G/A 1.55E-11 366 22.3 22.73 4.03 KM Plot
CRC rs35695435 chr7:61069010 T/C 1.14E-6 370 23.83 20.27 10.27 KM Plot